PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17293_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 284aa    MW: 32086.6 Da    PI: 4.4679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17293_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10135182454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++  rEr RR+++N++f  L ++l +    + +K +K +iL  A++ +++L
  RrC17293_p1 135 TKACRERLRREKLNEKFMDLSSVLEPG---RTPKTDKPAILDDAIRVLNQL 182
                  5678**********************8...8*****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.557131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-8135185No hitNo description
PfamPF000101.6E-7135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-12137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10139204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYPSLDDDDF VSDFFCFDQS NGAELDDYTQ FGVDLQPDQA DTFPDFGSYG VNLQNDPEQV  60
FSIGDLTSYN GVLAQEPGQF RNFGGPNDCG TVREDVVVVN SGSSGGPVKQ EQEHVDEECS  120
RKRGRTGSCV RPGGTKACRE RLRREKLNEK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN  180
QLRDEAHEIE ETNQKLLEEI KSLKAEKNEL REEKQALKAE KEKTEQQLKS MMVPSTGFMP  240
QIPTPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532960.0AK353296.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686728.10.0PREDICTED: transcription factor bHLH104-like isoform X2
RefseqXP_013678511.10.0PREDICTED: transcription factor bHLH104-like isoform X2
RefseqXP_013637415.10.0PREDICTED: transcription factor bHLH104 isoform X2
RefseqXP_009124106.10.0PREDICTED: transcription factor bHLH104 isoform X2
SwissprotQ8L4671e-167BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A078FEH20.0A0A078FEH2_BRANA; BnaC04g28710D protein
STRINGBra041033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.11e-121bHLH family protein